/*
 *
 *  This file is part of the SIRIUS library for analyzing MS and MS/MS data
 *
 *  Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker,
 *  Chair of Bioinformatics, Friedrich-Schilller University.
 *
 *  This library is free software; you can redistribute it and/or
 *  modify it under the terms of the GNU Lesser General Public
 *  License as published by the Free Software Foundation; either
 *  version 3 of the License, or (at your option) any later version.
 *
 *  This library is distributed in the hope that it will be useful,
 *  but WITHOUT ANY WARRANTY; without even the implied warranty of
 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
 *  Lesser General Public License for more details.
 *
 *  You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see <https://www.gnu.org/licenses/lgpl-3.0.txt>
 */

package de.unijena.bioinf.fingerid.blast.parameters;/*
 *
 *  This file is part of the SIRIUS library for analyzing MS and MS/MS data
 *
 *  Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman and Sebastian Böcker,
 *  Chair of Bioinformatics, Friedrich-Schilller University.
 *
 *  This library is free software; you can redistribute it and/or
 *  modify it under the terms of the GNU Lesser General Public
 *  License as published by the Free Software Foundation; either
 *  version 3 of the License, or (at your option) any later version.
 *
 *  This library is distributed in the hope that it will be useful,
 *  but WITHOUT ANY WARRANTY; without even the implied warranty of
 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
 *  Lesser General Public License for more details.
 *
 *  You should have received a copy of the GNU General Public License along with SIRIUS. If not, see <https://www.gnu.org/licenses/lgpl-3.0.txt>
 */

import de.unijena.bioinf.ChemistryBase.chem.ImmutableMolecularFormula;
import de.unijena.bioinf.ChemistryBase.chem.MolecularFormula;
import de.unijena.bioinf.ChemistryBase.fp.ProbabilityFingerprint;
import de.unijena.bioinf.ms.annotations.Annotated;

public class MFandFpParameters {

    protected final MolecularFormula queryMF;
    protected final ProbabilityFingerprint queryFP;

    public MFandFpParameters(MolecularFormula queryMF, ProbabilityFingerprint queryFP) {
        this.queryMF = queryMF;
        this.queryFP = queryFP;
    }

    public ProbabilityFingerprint getFP() {
        return queryFP;
    }

    public MolecularFormula getFormula() {
        return queryMF;
    }

    public static MFandFpParameters from(ParameterStore store){
        return new MFandFpParameters(store.get(ImmutableMolecularFormula.class).orElseThrow(),store.get(ProbabilityFingerprint.class).orElseThrow());
    }
}
